Basic Information
VIS ID
TVIS44030426
Fusion event
HTLV-1-CTNND2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr5
Cytoband
p15.2
Reference genome
NCBI36/hg18
Start
11894039/11840927 (Hg38)
End
11894039/11840927 (Hg38)
Orient
-
Location type
Intronic
Target gene
CTNND2
Nearest miRNA
hsa-mir-10397/Upstream/1362782; hsa-mir-103a-1/Downstream/2985002;
Nearest TSS
ENST00000502646/Upstream/251908; ENST00000505877/Downstream/62265;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/455518, chr5-CpG: 141/Downstream/62511
Nearest cancer related gene
CTNND2(OG, No orient, 0)
Upstream sequence
GCCCATGTATCTATACATTCAAGTAATTTGGAAACTCCACTTTTTAACGGGCATATCTACCCTATCAGGCAGCCACTGACAAACTTGAAATGGGTAACAT
Downstream sequence
AAAATATCTAAAATATTTTTATGTTGATAAAACTACTATAACAAactttatggcaaacaccatgctgaatgccaggaatacattttcattgaattctcac
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate