Basic Information
VIS ID
TVIS44030430
Fusion event
HTLV-1-APBA2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr15
Cytoband
q13.1
Reference genome
NCBI36/hg18
Start
27122080/29042585 (Hg38)
End
27122080/29042585 (Hg38)
Orient
+
Location type
Intronic
Target gene
APBA2
miRNAs that regulate target gene
hsa-mir-148b-3p ; hsa-mir-615-3p
Nearest miRNA
hsa-mir-1268a/Upstream/551740; hsa-mir-10393/Downstream/2022447;
Nearest TSS
ENST00000557528/Upstream/52166; ENST00000558358/Downstream/1739;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/155523, chr15-CpG: 62/Downstream/60853
Upstream sequence
ctgaccttgtgatccgcccgcctcggcctcccaaagtgctgggattacaggagtgagccaccacacccagctgcagtgatcctatttctaaacaaagtat
Downstream sequence
attctgaggtacaggggatgagaacttaaacatatgaattttgaggggacataattcagccataacaCGGATGTGGCTTATTTTAAATCTACACAGTACT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate