Basic Information
VIS ID
TVIS44030432
Fusion event
HTLV-1-MIR3681HG integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr2
Cytoband
p24.3
Reference genome
NCBI36/hg18
Start
12133276/12075699 (Hg38)
End
12133276/12075699 (Hg38)
Orient
+
Location type
Intronic
Target gene
MIR3681HG
Nearest miRNA
hsa-mir-4261/Upstream/238713; hsa-mir-10b/Downstream/123431;
Nearest TSS
ENST00000437798/Upstream/68525; ENST00000449986/Downstream/30885;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/290572, chr2-CpG: 204/Downstream/640800
Upstream sequence
tgcacatactatgttttaaagattcatccaaattatgtgtgtatcaatgttttttttttttaatttgtatataagtagtccattatttgactataccaca
Downstream sequence
atttatgtattcattcttctgttgatggtcagtggggttgttttcagcttttggcaattatgaataagcctgctgtaaataatcttgtttatttcttttt
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate