Basic Information
VIS ID
TVIS44030441
Fusion event
HTLV-1-FAM230F integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr22
Cytoband
q11.21
Reference genome
NCBI36/hg18
Start
17258440/18890927 (Hg38)
End
17258440/18890927 (Hg38)
Orient
+
Location type
Intronic
Target gene
FAM230F
Nearest miRNA
hsa-mir-3198-1/Upstream/909966; hsa-let-7a-3/Downstream/1072826;
Nearest TSS
ENST00000624155/Upstream/134579; ENST00000608842/Downstream/3480;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/17278, chr22-CpG: 102/Downstream/14811
Upstream sequence
gcatttgacaggccagtatgaacacaacttgaacgcagcaagacaggttccccataaaaaaatcaaacacagggaaaatgaaaccacaaagtttcaatct
Downstream sequence
gctctgacctttgaaaaactcagcacagacagtggcacttaggaccaacagcaggagatccctaatcccatcaccatggcgatagggcataaacattcca
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate