VISDB Viral Integration Site DataBase

VIS ID

TVIS44030446

Fusion event

HTLV-1-ELK4 integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr1

Cytoband

q32.1

Reference genome

Start

End

203864306/205628555 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-484 ; hsa-let-7b-5p ; hsa-mir-181a-5p ; hsa-mir-181b-5p ; hsa-mir-181c-5p ; hsa-mir-181d-5p ; hsa-mir-4262 ; hsa-mir-5011-5p ; hsa-mir-5582-3p ; hsa-mir-6715a-3p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-6838-5p ; hsa-mir-16-1-3p ; hsa-mir-1305 ; hsa-mir-155-5p ; hsa-mir-126-5p ; hsa-mir-498 ; hsa-mir-335-3p ; hsa-mir-4795-3p ; hsa-mir-3140-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-3973 ; hsa-mir-656-3p ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-520f-3p ; hsa-mir-302c-3p ; hsa-mir-4687-5p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-93-5p ; hsa-mir-17-5p ; hsa-mir-519d-3p ; hsa-mir-526b-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-5089-3p ; hsa-mir-302a-5p ; hsa-mir-5684 ; hsa-mir-1255b-2-3p ; hsa-mir-4477a ; hsa-mir-411-3p ; hsa-mir-379-3p ; hsa-mir-451b ; hsa-mir-5700 ; hsa-mir-3939 ; hsa-mir-4704-3p ; hsa-mir-190a-3p ; hsa-mir-499b-3p ; hsa-mir-499a-3p ; hsa-mir-8485 ; hsa-mir-6715b-3p ; hsa-mir-1248 ; hsa-mir-3163 ; hsa-mir-6776-3p ; hsa-mir-655-3p ; hsa-mir-374c-5p ; hsa-mir-521 ; hsa-mir-603 ; hsa-mir-1238-5p ; hsa-mir-1252-5p ; hsa-mir-2278 ; hsa-mir-298 ; hsa-mir-3681-5p ; hsa-mir-376b-5p ; hsa-mir-376c-5p ; hsa-mir-4468 ; hsa-mir-4481 ; hsa-mir-4670-5p ; hsa-mir-4745-5p ; hsa-mir-4758-5p ; hsa-mir-5191 ; hsa-mir-548c-3p ; hsa-mir-6501-3p ; hsa-mir-651-3p ; hsa-mir-6849-5p ; hsa-mir-1231 ; hsa-mir-1270 ; hsa-mir-4683 ; hsa-mir-4708-5p ; hsa-mir-516b-5p ; hsa-mir-620 ; hsa-mir-654-3p

Nearest miRNA

hsa-mir-101-1/Upstream/180157; hsa-mir-1182/Downstream/846248;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/36210, chr1-CpG: 115/Downstream/2810

Upstream sequence

GAGATGATGAAGGAAAGACAGAGAATGGGAGTCTCTAGCCTACACAGATGTGGTGCCTATTATTCCATTTGTTTTTGAAAAAATTCCAACACCCGGATCC

Downstream sequence

TAGAGTCTTAATACCTATTATGTAGATAACATTTCAGCCCTACAAGTTTAAAGCCTCAGCTATACATCTAAAGACAAAAACAACAAATTAACGTCTCCAT