Basic Information
VIS ID
TVIS44030460
Fusion event
HTLV-1-C12orf42 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr12
Cytoband
q23.2
Reference genome
NCBI36/hg18
Start
102129102/103211194 (Hg38)
End
102129102/103211194 (Hg38)
Orient
-
Location type
Intronic
Target gene
C12orf42
Nearest miRNA
hsa-let-7i/Upstream/3021245; hsa-mir-1178/Downstream/719231;
Nearest TSS
ENST00000382841/Upstream/32519; ENST00000551174/Downstream/56698;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/245343, chr12-CpG: 29/Downstream/91118
Upstream sequence
gattattgtttcctgagttctctttctgggttttctctcttgcttttttggagcatatcctacaacaccctctatttctaacagaaggtatacagaaagc
Downstream sequence
ttttttgtgcatgtGGAGATTTTGTTTATCTAAACATCTTTAAAAACTAATGCAACCTCTGGTGGCACTtcctcttcttataaggccaccaatcctatct
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate