Basic Information
VIS ID
TVIS44030464
Fusion event
HTLV-1-LINC02725 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr11
Cytoband
q24.3
Reference genome
NCBI36/hg18
Start
127497023/128121918 (Hg38)
End
127497023/128121918 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02725
Nearest miRNA
hsa-let-7a-2/Upstream/1133376; hsa-mir-4697/Downstream/400472;
Nearest TSS
ENST00000527297/Upstream/850856; ENST00000609911/Downstream/58509;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1118004, chr11-CpG: 20/Downstream/329848
Upstream sequence
ggacacaaaaatcattaacaaaatactaacaaaccaaattcagaaacatatgaaaggaattatccaccatgaccaagtgggctttatcttagtgtaaggt
Downstream sequence
tagtttaacataataacaaatcaattaatgtaatataccaagttaataaaagaaagtacaataagcacatgatcatttcaaaaggagcagtaaattattt
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate