Basic Information
VIS ID
TVIS44030474
Fusion event
HTLV-1-LOC105374264 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr3
Cytoband
q27.3
Reference genome
NCBI36/hg18
Start
189058739/187858257 (Hg38)
End
189058739/187858257 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA3C
Target gene
LOC105374264
Nearest miRNA
hsa-let-7g/Upstream/1071480; hsa-mir-28/Downstream/830524;
Nearest TSS
ENST00000440867/Upstream/62002; ENST00000449845/Downstream/87964;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/113320, chr3-CpG: 27/Downstream/295433
Upstream sequence
ATACCTTGACCCCAACATTGAAAAGGCAGACCCAGATTCTTCAATGACCACAAGAGGCCTTGGTTTAAGAAGCCTGCCAACGAAGCACAATGTTCCCATC
Downstream sequence
CTCAGAAATAGACCCCGGCGGAGCTTCCAGGGGCCCATAAAAGTCTGCACTCTTGGAAGAATGTGACAACTCTGGCAACAAATACAGATTCGTCATTCTC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate