Basic Information
VIS ID
TVIS44030502
Fusion event
HTLV-1-DDX60L integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
q32.3
Reference genome
NCBI36/hg18
Start
169633145/168475419 (Hg38)
End
169633145/168475419 (Hg38)
Orient
-
Location type
Intronic
Target gene
DDX60L
Nearest miRNA
hsa-mir-12113/Upstream/3089082; hsa-mir-1305/Downstream/2710765;
Nearest TSS
ENST00000502981/Upstream/19360; ENST00000511948/Downstream/4879;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/156746, chr4-CpG: 37/Downstream/4780
Upstream sequence
GCTCTGACATATGACCAATGTCTTTCATCTTCTTTAATGCTTTGAAAAGTCTACTGTAATCAAGTTTTAATTATATAGAATGCATTTCCTATTTGGATCT
Downstream sequence
GATCACAAAACTTGACTCCATAATGAATACTATGTATACAGTTATGTTGTGTTTGTTTTTCAATTTTTAGACTCAATGTATAGAtaaataacaatgaact
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate