Basic Information
VIS ID
TVIS44030512
Fusion event
HTLV-1-LOC101928306 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
p16.2
Reference genome
NCBI36/hg18
Start
4985234/4932606 (Hg38)
End
4985234/4932606 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC101928306
Nearest miRNA
hsa-mir-4800/Upstream/2682450; hsa-mir-12113/Downstream/990669;
Nearest TSS
ENST00000502981/Upstream/70178; ENST00000513705/Downstream/86831;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/60160, chr4-CpG: 27/Downstream/86670
Upstream sequence
GATATAAAATAAAGACCAATTTTAGTTGAGGTGTCACTtctctttgtctctctgtctttctcgctctctctctctctttctctctctctACATACAATGT
Downstream sequence
GTATAAATAATATATAACATATTCTGTCACCATATTTATATGCTCACAAAAGTTTTTCAAGCTGTTTCTCCTTCCTTGAAGCTGTTTTGAATTTATGAGC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate