Basic Information
VIS ID
TVIS44030526
Fusion event
HTLV-1-LOC105376350 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr10
Cytoband
p15.3
Reference genome
NCBI36/hg18
Start
2615300/2583108 (Hg38)
End
2615300/2583108 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105376350
Nearest miRNA
hsa-mir-5699/Upstream/507019; hsa-mir-107/Downstream/1408052;
Nearest TSS
ENST00000439456/Upstream/81305; ENST00000439575/Downstream/427423;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/60078, chr10-CpG: 33/Downstream/189703
Upstream sequence
cacgaccataagttgaagagacacagtaaacctcaaaagaagactgagacatgatatgttagaattcctggtcagaccaggaatcacagtgcttgttact
Downstream sequence
tacccaaaggagctgaagacttatgtgtacaccaaaacatgcattcaaatgtttacaacagctttattaataattgttcaaatttggaagcaaccaagat
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate