Basic Information
VIS ID
TVIS44030530
Fusion event
HTLV-1-INTS6L integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chrX
Cytoband
q26.3
Reference genome
NCBI36/hg18
Start
134500148/135538557 (Hg38)
End
134500148/135538557 (Hg38)
Orient
+
Location type
Intronic
Target gene
INTS6L
Nearest miRNA
hsa-let-7f-2/Upstream/991846; hsa-mir-105-1/Downstream/1012321;
Nearest TSS
ENST00000429181/Upstream/17564; ENST00000481429/Downstream/41328;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/16355, chrX-CpG: 93/Downstream/434955
Upstream sequence
gcagttacttcctccactggagttttgaaccccttaaagtcatccatgaaggttggaatcaccttcttccaaactcctgctaatgttggtattttgacct
Downstream sequence
cctcccatgaatcacgaatgttcttaatgtcgtctagaatgttgaatcattcccagaaggttttcaacttttcccagacgcatcacaggaatcactatct
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate