VISDB Viral Integration Site DataBase

VIS ID

TVIS44030545

Fusion event

HTLV-1-ABHD18 integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr4

Cytoband

q28.2

Reference genome

Start

End

129120379/127979774 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1277-5p ; hsa-mir-448 ; hsa-mir-190a-3p ; hsa-mir-586 ; hsa-mir-4474-5p ; hsa-mir-5011-5p ; hsa-mir-8086 ; hsa-mir-150-5p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-511-3p ; hsa-mir-374b-5p ; hsa-mir-374a-5p ; hsa-mir-655-3p ; hsa-mir-374c-5p ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-5186 ; hsa-mir-410-3p ; hsa-mir-369-3p ; hsa-mir-4789-5p ; hsa-mir-3941 ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-5580-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-133a-3p ; hsa-mir-5089-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-323a-5p ; hsa-mir-4281 ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6778-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-1224-3p ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-6504-3p ; hsa-mir-512-3p ; hsa-mir-552-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-5096 ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-378a-5p ; hsa-mir-197-3p ; hsa-mir-6131 ; hsa-mir-302a-5p ; hsa-mir-3663-5p ; hsa-mir-4716-5p ; hsa-mir-4781-3p ; hsa-mir-2682-3p ; hsa-mir-6781-3p

Nearest miRNA

hsa-mir-12113/Upstream/2472467; hsa-mir-1305/Downstream/15363686;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/13958, chr4-CpG: 163/Downstream/80881

Upstream sequence

ggaggccgaggcgggtggatcatctgaggtcaggagtttgagaccagcctggccaacatggcaaaatcctgcatctactaaaaatacaaaaattagctgg

Downstream sequence

gcgtgctgctgtgtgcctgtaatcccagctatttaggaggctaaggcaggagaatcacttgagccaaggaggtagaggttgcattgagccaagattgtgc