Basic Information
VIS ID
TVIS44030549
Fusion event
HTLV-1-LOC105370114 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr13
Cytoband
q12.12
Reference genome
NCBI36/hg18
Start
23156576/23684437 (Hg38)
End
23156576/23684437 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105370114
Nearest miRNA
hsa-mir-4499/Upstream/3250591; hsa-mir-1267/Downstream/477979;
Nearest TSS
ENST00000623511/Upstream/105057; ENST00000439928/Downstream/72393;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/104436, chr13-CpG: 52/Downstream/10923
Upstream sequence
atttggcttatttggttaaaaaaatcatacaagcagcattgtcaaatataaaatggtgtttggctttctttgggttgtatttgtataaatatgttactgg
Downstream sequence
tatgtgtccaaaaattatgagaaactcctatgattctaatatggcttaccatatgttattaataattacaatcgttacataaaatcattgtatgccacag
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate