Basic Information
VIS ID
TVIS44030554
Fusion event
HTLV-1-CFAP99 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
p16.3
Reference genome
NCBI36/hg18
Start
2432575/2461050 (Hg38)
End
2432575/2461050 (Hg38)
Orient
+
Location type
Intronic
Target gene
CFAP99
Nearest miRNA
hsa-mir-4800/Upstream/210894; hsa-mir-12113/Downstream/3462225;
Nearest TSS
ENST00000502981/Upstream/1013; ENST00000504782/Downstream/1170;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/30449, chr4-CpG: 109/Downstream/1229
Upstream sequence
atggtctcgaactcctgacctcgtgatctgcccgccttggcctcccaaaatgctgggattacaggtgtgagccCAGCCTGGCTAACATTTTTAAAAGACT
Downstream sequence
GTTGCTGTAACTTTTTTTTTCTTTTTAAACCAGGATCTAGTTGAGGGTTGCAGATAGCTCGTTTGCATGCACACACATACAGATGCCTTTTTACTTGTTT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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