Basic Information
VIS ID
TVIS44030565
Fusion event
HTLV-1-ZNF184 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr6
Cytoband
p22.1
Reference genome
NCBI36/hg18
Start
27542983/27467225 (Hg38)
End
27542983/27467225 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZNF184
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p
Nearest miRNA
hsa-mir-3143/Upstream/319537; hsa-mir-10398/Downstream/3117107;
Nearest TSS
ENST00000381078/Upstream/60261; ENST00000625477/Downstream/5456;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/77984, chr6-CpG: 43/Downstream/5609
Upstream sequence
TATCGAAATGTCACCTATTGTTTTAGAGGCATCCCAAGTCCCCCATCCTCCATGAAACTCTCCTAATCCCTCCAGACCACATACATTTTTCCATTCTCTA
Downstream sequence
ATATCCACATTACTCATTTCACCTTTCTTACATTTACCTGTTTTATTTTCTAGCAGTCATTTTGGCCTATTAAAGGATCAAGTTTTGGggcctggcgtgg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate