VISDB Viral Integration Site DataBase

VIS ID

TVIS44030567

Fusion event

HTLV-1-NUP42 integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr7

Cytoband

p15.3

Reference genome

Start

End

23188306/23182162 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-34a-5p ; hsa-mir-101-3p ; hsa-mir-186-5p ; hsa-mir-623 ; hsa-mir-759 ; hsa-mir-4755-5p ; hsa-mir-5006-3p ; hsa-mir-30a-3p ; hsa-mir-30d-3p ; hsa-mir-30e-3p ; hsa-mir-517a-3p ; hsa-mir-517b-3p ; hsa-mir-517c-3p ; hsa-mir-590-3p ; hsa-mir-548k ; hsa-mir-548n ; hsa-mir-4536-3p ; hsa-mir-4775 ; hsa-mir-548av-5p ; hsa-mir-8054 ; hsa-mir-5009-3p ; hsa-mir-599 ; hsa-mir-3161 ; hsa-mir-3164 ; hsa-mir-6820-3p ; hsa-mir-4766-5p ; hsa-mir-369-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-323a-5p ; hsa-mir-335-3p ; hsa-mir-3622b-5p ; hsa-mir-539-5p ; hsa-mir-4277 ; hsa-mir-584-3p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-6845-3p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-6736-3p ; hsa-mir-3617-3p ; hsa-mir-34a-3p ; hsa-mir-7703 ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-7159-5p ; hsa-mir-6729-5p ; hsa-mir-4649-5p ; hsa-mir-1273a ; hsa-mir-661 ; hsa-mir-4252 ; hsa-mir-873-3p ; hsa-mir-4486 ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6827-3p ; hsa-mir-340-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-3065-5p ; hsa-mir-5586-3p ; hsa-mir-508-5p ; hsa-mir-4797-5p ; hsa-mir-5572 ; hsa-mir-6855-5p ; hsa-mir-3170 ; hsa-mir-6819-5p ; hsa-mir-6812-5p ; hsa-mir-6737-5p ; hsa-mir-642a-5p ; hsa-mir-7704 ; hsa-mir-615-5p ; hsa-mir-6774-5p ; hsa-mir-635 ; hsa-mir-4469 ; hsa-mir-5088-3p ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-1247-3p ; hsa-mir-1292-3p ; hsa-mir-1297 ; hsa-mir-1976 ; hsa-mir-26a-5p ; hsa-mir-26b-5p ; hsa-mir-3157-5p ; hsa-mir-3622a-3p ; hsa-mir-3622b-3p ; hsa-mir-3653-5p ; hsa-mir-4279 ; hsa-mir-4465 ; hsa-mir-4532 ; hsa-mir-4691-3p ; hsa-mir-4722-3p ; hsa-mir-5001-3p ; hsa-mir-6513-3p ; hsa-mir-6727-3p ; hsa-mir-6747-3p ; hsa-mir-6778-3p ; hsa-mir-6791-3p ; hsa-mir-6829-3p ; hsa-mir-6836-3p ; hsa-mir-8062

Nearest miRNA

hsa-mir-1183/Upstream/1711016; hsa-mir-10399/Downstream/2767757;

Nearest TSS

Nearest CpG islands

chr7-CpG: 53/Target, None/Upstream, None/Downstream

Upstream sequence

CCTCCGTCAGCGACGCCGTCGCAATGGCCATTTGTCAATTCTTCCTTCAAGGCCGGTGCCGCTTTGGAGATCGGTGCTGGAACGAACATCCCGGTGCTAG

Downstream sequence

GGGTGCAGGAGGAGGACGGCAGCAACCGCAGCAGCAGCCTTCAGGTGACTCTCCTCTGAATCCTCCGCGGTAACCGAGCCGGGAAGGGTCCGCCGGCGGG