Basic Information
VIS ID
TVIS44030574
Fusion event
HTLV-1-CFAP300 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr11
Cytoband
q22.1
Reference genome
NCBI36/hg18
Start
101439599/102063658 (Hg38)
End
101439599/102063658 (Hg38)
Orient
-
Location type
Intronic
Target gene
CFAP300
miRNAs that regulate target gene
hsa-mir-4284 ; hsa-mir-4772-3p ; hsa-mir-4638-5p ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-4532 ; hsa-mir-1247-3p ; hsa-mir-6890-3p
Nearest miRNA
hsa-mir-10392/Upstream/543753; hsa-let-7a-2/Downstream/1786248;
Nearest TSS
ENST00000527297/Upstream/16190; ENST00000529204/Downstream/2884;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/15896, chr11-CpG: 180/Downstream/46243
Upstream sequence
ggctcacccctgtaatcccaacacttcaagaggccaaggtgggaggatcacttgagcccaggcatttgagactagcctgggcaacacagcagaccctatc
Downstream sequence
tctacaaaaaactatctggctgtgttggcacacacctgtagtcccagctattcagaaggctgaggcagaagaatcacttgagcccaggaagttgaggcca
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate