Basic Information
VIS ID
TVIS44030575
Fusion event
HTLV-1-PTPRR integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr12
Cytoband
q15
Reference genome
NCBI36/hg18
Start
69461035/70780988 (Hg38)
End
69461035/70780988 (Hg38)
Orient
-
Location type
Intronic
Target gene
PTPRR
miRNAs that regulate target gene
hsa-mir-150-5p
Nearest miRNA
hsa-let-7i/Upstream/1196165; hsa-mir-1178/Downstream/8638269;
Nearest TSS
ENST00000382841/Upstream/26229; ENST00000549015/Downstream/7994;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/170711, chr12-CpG: 104/Downstream/658424
Upstream sequence
ATTCTGCCTACCTGTAAAGACCATATAATCTGGTCTGTTCTTTGCAAGTGGTAAAGTAAGCCCAAAGGCATTGTCCCTGCAGGAGAGTGCTGTGGTTTAC
Downstream sequence
CATTGCTGCCTGTGACTGGTGAGAAAATTTGCTTGAAGGAGGTGCAGTCATAAAAGAATATCACTTTCGTGATTTGAAGTCACAAATGCAGCAGCTCTAT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate