VISDB Viral Integration Site DataBase

VIS ID

TVIS44030590

Fusion event

HTLV-1-COX18 integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr4

Cytoband

q13.3

Reference genome

Start

End

74139356/73054775 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-92a-3p ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-661 ; hsa-mir-873-3p ; hsa-mir-642b-3p ; hsa-mir-642a-3p ; hsa-mir-6776-5p ; hsa-mir-766-3p ; hsa-mir-6742-3p ; hsa-mir-3681-3p ; hsa-mir-6849-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-508-5p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-6499-3p ; hsa-mir-2467-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-1827 ; hsa-mir-4537 ; hsa-mir-4257 ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-602 ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-3613-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-1304-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6765-5p ; hsa-mir-7977 ; hsa-mir-654-5p ; hsa-mir-541-3p ; hsa-mir-6721-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-4728-5p ; hsa-mir-6785-5p ; hsa-mir-7106-5p ; hsa-mir-149-3p ; hsa-mir-6089 ; hsa-mir-5008-5p ; hsa-mir-383-3p ; hsa-mir-1288-5p ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-4761-5p ; hsa-mir-3135a ; hsa-mir-542-3p ; hsa-mir-6510-3p ; hsa-mir-6800-5p

Nearest miRNA

hsa-mir-12113/Upstream/6777847; hsa-mir-1243/Downstream/3518793;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/485171, chr4-CpG: 71/Downstream/14452

Upstream sequence

GGGACTCACAGTAAACAAGGTAAATTATGCACATGAAAGAAGATTCATTTATTTGAAAAGGAAGTATCTGGAGATAGGAAAAACCAAAGATGTTTTTTCC

Downstream sequence

TACTTTCttttttgtacagacaaggtctcactatgttgcccaggctgatctggaactcctggccacaaggatctgcccTatcctgaaactttctaggggc