Basic Information
VIS ID
TVIS44030599
Fusion event
HTLV-1-OR1B1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr9
Cytoband
q33.2
Reference genome
NCBI36/hg18
Start
124406956/122604856 (Hg38)
End
124406956/122604856 (Hg38)
Orient
-
Location type
Intronic
Target gene
OR1B1
Nearest miRNA
hsa-let-7a-1/Upstream/484689; hsa-mir-12126/Downstream/506690;
Nearest TSS
ENST00000422679/Upstream/21472; ENST00000297913/Downstream/5059;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/257491, chr9-CpG: 42/Downstream/223280
Upstream sequence
CAAGTGGCCAGGAGAAGAGAAACCAAGGATTCATTTACCCTTCTTCACAGGCAGGGAAACTATAATAGATTTCAGAGACAATAAATGAATTATTCAAACC
Downstream sequence
CATATTATTGGGCTTGATGCAGAAGGCTAATTAAGATTTTCTTAGTGCAAACTAAAGTTTTTTTTACCATTACACTGTTCAACCTAAATATTCTCTTCAG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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