Basic Information
VIS ID
TVIS44030602
Fusion event
HTLV-1-ZSWIM8 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr10
Cytoband
q22.2
Reference genome
NCBI36/hg18
Start
75220351/73790587 (Hg38)
End
75220351/73790587 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZSWIM8
miRNAs that regulate target gene
hsa-mir-484 ; hsa-mir-149-5p
Nearest miRNA
hsa-mir-1265/Upstream/1069487; hsa-mir-107/Downstream/1761871;
Nearest TSS
ENST00000439456/Upstream/1085; ENST00000431225/Downstream/737;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/4436, chr10-CpG: 116/Downstream/20537
Upstream sequence
TTACCTAGCAAGAGTTCCTTTTCTTCTTTTGATAGATCAGGAAATGGAAACAGAGAAAGATTTTTTAAAGAGTTTTTGTggctgggggcggtggctcata
Downstream sequence
cctataatcccagcattttgggaggctgacgtgggcagatcacctgagatcaggagttcgagaccagcctggccaacatggcgaatctccatctctacta
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate