Basic Information
VIS ID
TVIS44030611
Fusion event
HTLV-1-ACCS integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr11
Cytoband
p11.2
Reference genome
NCBI36/hg18
Start
44059012/44080886 (Hg38)
End
44059012/44080886 (Hg38)
Orient
+
Location type
Intronic
Target gene
ACCS
Nearest miRNA
hsa-mir-129-2/Upstream/499403; hsa-let-7a-2/Downstream/1610818;
Nearest TSS
ENST00000527297/Upstream/376; ENST00000534035/Downstream/132;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/14271, chr11-CpG: 90/Downstream/14681
Upstream sequence
ttaaactttatttacaagaaacaggcagcaggctatgtttggcccgcgggctgtcatttgctaacccctgCTCTAAAGGATGCATGGGAATGGGTGGTTC
Downstream sequence
AAAGACATGAAACCAGGGCTTGTCCTGGAACCAAAACTAGATTCAACCACCCATCTCTTCATTTGTTCAACCAAACACATGTGGGTTTCCATAGTTCTGT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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