VISDB Viral Integration Site DataBase

VIS ID

TVIS44030618

Fusion event

HTLV-1-G3BP1 integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr5

Cytoband

q33.1

Reference genome

Start

End

151160233/151800479 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-30a-5p ; hsa-mir-23b-3p ; hsa-mir-1-3p ; hsa-mir-320b ; hsa-mir-941 ; hsa-mir-744-5p ; hsa-mir-18a-3p ; hsa-mir-193b-3p ; hsa-mir-484 ; hsa-mir-320a ; hsa-mir-186-5p ; hsa-mir-30b-5p ; hsa-mir-197-3p ; hsa-mir-1260b ; hsa-mir-577 ; hsa-mir-605-3p ; hsa-mir-4328 ; hsa-mir-4709-5p ; hsa-mir-5003-5p ; hsa-mir-5582-5p ; hsa-mir-518a-5p ; hsa-mir-527 ; hsa-mir-559 ; hsa-mir-548b-5p ; hsa-mir-548a-5p ; hsa-mir-548c-5p ; hsa-mir-622 ; hsa-mir-651-3p ; hsa-mir-548d-5p ; hsa-mir-548j-5p ; hsa-mir-548h-5p ; hsa-mir-548i ; hsa-mir-548w ; hsa-mir-548y ; hsa-mir-548o-5p ; hsa-mir-548ab ; hsa-mir-548ad-5p ; hsa-mir-548ae-5p ; hsa-mir-548ak ; hsa-mir-548am-5p ; hsa-mir-3973 ; hsa-mir-548ap-5p ; hsa-mir-548aq-5p ; hsa-mir-548ar-5p ; hsa-mir-548as-5p ; hsa-mir-548au-5p ; hsa-mir-548ay-5p ; hsa-mir-6830-5p ; hsa-mir-548bb-5p ; hsa-mir-4419a ; hsa-mir-4510 ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6133 ; hsa-mir-6873-5p ; hsa-mir-3714 ; hsa-mir-3154 ; hsa-mir-3145-5p ; hsa-mir-6510-5p ; hsa-mir-6824-5p ; hsa-mir-3175 ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-27b-5p ; hsa-mir-600 ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-6783-5p ; hsa-mir-942-3p ; hsa-mir-4802-3p ; hsa-mir-6891-5p ; hsa-mir-4789-3p ; hsa-mir-3173-3p ; hsa-mir-3139 ; hsa-mir-28-5p ; hsa-mir-708-5p ; hsa-mir-101-3p ; hsa-mir-6800-5p ; hsa-mir-582-5p ; hsa-mir-4710 ; hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-483-5p ; hsa-mir-4681 ; hsa-mir-376c-3p ; hsa-mir-7161-5p ; hsa-mir-8087 ; hsa-mir-548u ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6077 ; hsa-mir-5681a ; hsa-mir-873-5p ; hsa-mir-6760-5p ; hsa-mir-9500 ; hsa-mir-6758-5p ; hsa-mir-6856-5p ; hsa-mir-3974 ; hsa-mir-548m ; hsa-mir-4503 ; hsa-mir-6792-5p ; hsa-mir-7704 ; hsa-mir-615-5p ; hsa-mir-7155-5p ; hsa-mir-1-5p ; hsa-mir-4494 ; hsa-mir-4463 ; hsa-mir-508-5p ; hsa-mir-4707-3p ; hsa-mir-6885-3p ; hsa-mir-6805-3p ; hsa-mir-5691 ; hsa-mir-3194-3p ; hsa-mir-551b-5p ; hsa-mir-4674 ; hsa-mir-7156-3p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-4437 ; hsa-mir-378g ; hsa-mir-1184 ; hsa-mir-1304-3p ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-6890-3p ; hsa-mir-509-5p ; hsa-mir-509-3-5p ; hsa-mir-4418 ; hsa-mir-6750-3p ; hsa-mir-3680-5p ; hsa-mir-4742-3p ; hsa-mir-4641 ; hsa-mir-3925-5p ; hsa-mir-1180-3p ; hsa-mir-6079 ; hsa-mir-4703-3p ; hsa-mir-3202 ; hsa-mir-4533 ; hsa-mir-4722-5p ; hsa-mir-20b-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-890 ; hsa-mir-4715-3p ; hsa-mir-6845-3p ; hsa-mir-1227-3p ; hsa-mir-4717-3p ; hsa-mir-342-3p ; hsa-mir-455-5p ; hsa-mir-1285-5p ; hsa-mir-329-3p ; hsa-mir-362-3p ; hsa-mir-6512-5p ; hsa-mir-8485

Nearest miRNA

hsa-mir-10397/Upstream/278331; hsa-mir-103a-1/Downstream/2546627;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/27954, chr5-CpG: 41/Downstream/124186

Upstream sequence

TAGTGTCTCTCTagcactgtccagtagcaatagaaaatgagccacatatgtaattataaattttctagtagtcatggttaaaaaaaaaaaggtaaaaaga

Downstream sequence

aactggataattttaataacatttaacttaaggcattgtcatttcaacatgtaagaatattgtgagagatattttacactttttcataatctttgaaatc