Basic Information
VIS ID
TVIS44030621
Fusion event
HTLV-1-ADAMTSL3 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr15
Cytoband
q25.2
Reference genome
NCBI36/hg18
Start
82231341/83771585 (Hg38)
End
82231341/83771585 (Hg38)
Orient
+
Location type
Intronic
Target gene
ADAMTSL3
Nearest miRNA
hsa-mir-10393/Upstream/704170; hsa-mir-11181/Downstream/1609011;
Nearest TSS
ENST00000557528/Upstream/77291; ENST00000567663/Downstream/99327;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/116566, chr15-CpG: 65/Downstream/308256
Upstream sequence
tgcttcaatgagtcggtctatgttagatacctcatataaatggaaccatgcagtatttgtcttttgtgactggcttgtttcacataacctaatgtcctca
Downstream sequence
agattcatccatattgtggcatgtgataggctttccttctttttaatggctccatagcatttcgttgtgtgtataccacatgttgtttatccattcatct
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate