Basic Information
VIS ID
TVIS44030633
Fusion event
HTLV-1-CDYL2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr16
Cytoband
q23.2
Reference genome
NCBI36/hg18
Start
79266390/80674992 (Hg38)
End
79266390/80674992 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA16D
Target gene
CDYL2
Nearest miRNA
hsa-mir-1225/Upstream/3805973; hsa-mir-11401/Downstream/710026;
Nearest TSS
ENST00000527434/Upstream/35256; ENST00000568437/Downstream/60141;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/133799, chr16-CpG: 180/Downstream/128435
Upstream sequence
GAGTCCCCTTTACAATGCATAGATGTGCAGgtgtgtgtgtatatatgatgtgtgcatgagtgtgtgatgtgtacatctgtgatgtgaatatgtgcatgtg
Downstream sequence
tatgtacatgcatacatgtgtgtgtgtTTTAATCTAAGGCCCTAAGGAAAATCACCAGGACCAGAGGTTCCACCTCCCTGGAATGCCAAGTCAGCATCTC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate