Basic Information
VIS ID
TVIS44030654
Fusion event
HTLV-1-LOC101929418 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr2
Cytoband
p23.1
Reference genome
NCBI36/hg18
Start
30217852/30141482 (Hg38)
End
30217852/30141482 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC101929418
Nearest miRNA
hsa-mir-1301/Upstream/2145033; hsa-mir-10b/Downstream/2390671;
Nearest TSS
ENST00000437798/Upstream/816; ENST00000482474/Downstream/2322;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/219798, chr2-CpG: 170/Downstream/4963
Upstream sequence
TCTCATAAGCTCAGGTTAAAGTAAACAacacacacacacacacactcactcacacacacacacacacacacacaATGCAACCTCAGCCTTATGACAGCTG
Downstream sequence
TACTCCACACAATGTTCAGGATCCAGGTTCCTCCCAGCTCATTGCTCCATTGTCCCTAGATGGCATCCTGGTCCCTGTGGTATAGACATCATTCATGATC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate