Basic Information
VIS ID
TVIS44030660
Fusion event
HTLV-1-CNTN4 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr3
Cytoband
p26.3
Reference genome
NCBI36/hg18
Start
2375300/2358616 (Hg38)
End
2375300/2358616 (Hg38)
Orient
+
Location type
Intronic
Target gene
CNTN4
miRNAs that regulate target gene
hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-4504 ; hsa-mir-661 ; hsa-mir-873-3p ; hsa-mir-6776-5p ; hsa-mir-6742-3p ; hsa-mir-6827-3p ; hsa-mir-340-3p ; hsa-mir-5586-3p
Nearest miRNA
hsa-let-7g/Downstream/2891561;
Nearest TSS
ENST00000440867/Upstream/119787; ENST00000480113/Downstream/152734;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/258516, chr3-CpG: 95/Downstream/768024
Upstream sequence
AAAACTGAACGATTAATAGTGTAAACTTGCTGAGGGAGAAATAAGGAGGACATGCTTTCCAGAACCAATTAAAAATGATTTTAGATGATCTGCTATTTCA
Downstream sequence
TATTCCCCACACCATTGCTTTTCCTATTAGCAGGTATAAGTGAGAATTAATGGCAAATAATGGCAACACAAATCAGTACTAAAGTGCATAGTCATTTTTC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate