Basic Information
VIS ID
TVIS44030664
Fusion event
HTLV-1-LOC133332 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
q32.2
Reference genome
NCBI36/hg18
Start
164406869/163266267 (Hg38)
End
164406869/163266267 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC133332
Nearest miRNA
hsa-mir-12113/Upstream/172639; hsa-mir-1305/Downstream/2119975;
Nearest TSS
ENST00000502981/Upstream/99346; ENST00000506953/Downstream/64899;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/99273, chr4-CpG: 56/Downstream/65535
Upstream sequence
GTCCTATTGAAAACTTTCCTACCTCAAGTATCCTGGTATCAAAATTACCATATGTTTCTCTGTTGGGACCAGGGTCAGAGGGCTAAGACTGATGCCTCCC
Downstream sequence
CACAAGTTTCCACTGCATCCTCGCTCTCATTTATCTTCATCCTCCTCTTCCGGTCCCATTATTCTCTCTGCTGGGTCATGTTGTCCTCCTCCTTCTGTTC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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