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TVIS44030674
Basic Information
VIS ID
TVIS44030674
Fusion event
HTLV-1-SLC1A1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr9
Cytoband
p24.2
Reference genome
NCBI36/hg18
Start
4483182/4493182 (Hg38)
End
4483182/4493182 (Hg38)
Orient
-
Location type
Intronic
Target gene
SLC1A1
miRNAs that regulate target gene
hsa-mir-335-5p
;
hsa-mir-96-5p
;
hsa-mir-204-5p
;
hsa-mir-211-5p
;
hsa-mir-186-5p
;
hsa-mir-500a-5p
;
hsa-mir-629-3p
;
hsa-mir-4287
;
hsa-mir-4469
;
hsa-mir-4685-3p
;
hsa-mir-4713-5p
;
hsa-mir-6867-3p
;
hsa-mir-6868-3p
;
hsa-mir-7113-3p
;
hsa-mir-5010-3p
;
hsa-mir-2113
;
hsa-mir-758-3p
;
hsa-mir-6720-5p
;
hsa-mir-6512-3p
;
hsa-mir-1255b-5p
;
hsa-mir-1255a
;
hsa-mir-6744-5p
;
hsa-mir-6849-3p
;
hsa-mir-5586-5p
;
hsa-mir-6835-3p
;
hsa-mir-4659b-3p
;
hsa-mir-4659a-3p
;
hsa-mir-6875-3p
;
hsa-mir-4641
;
hsa-mir-1248
;
hsa-mir-1237-3p
;
hsa-mir-6832-3p
;
hsa-mir-652-5p
Nearest miRNA
hsa-mir-1302-9/Upstream/4462901; hsa-let-7a-1/Downstream/357115;
Nearest TSS
ENST00000422679/Upstream/2738;
ENST00000490167/Downstream/66623;
Nearest CpG islands
None/Target,
chr9-CpG: 64/Upstream/1764
,
chr9-CpG: 66/Downstream/169070
Upstream sequence
CCAATTTTAATGTCTGTGAGCCCCAAGAGCTTAGTTTGAGTACTTTTCTCCAGAAAGGAAAGTCACCACTTAAAAATCAAGTGCCCAGCTGAAATCTTCC
Downstream sequence
TAGATATTTGTTCCTTCAGATGGCAACAAAGGGCAGTCCTGCTTCTGGTCTGAGAAGTCTCAAACCTAGACCACCCCCGATATGCCCATTAACAGGGGTC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Sample Information
×
Sample name
Co9
Sample type
Nontumor
Age
61
Gender
Male
CpG Island Information
×
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