Basic Information
VIS ID
TVIS44030680
Fusion event
HTLV-1-RGS7BP integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr5
Cytoband
q12.3
Reference genome
NCBI36/hg18
Start
63877263/64545680 (Hg38)
End
63877263/64545680 (Hg38)
Orient
-
Location type
Intronic
Target gene
RGS7BP
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-10397/Upstream/4841977; hsa-mir-103a-1/Downstream/7623787;
Nearest TSS
ENST00000502646/Upstream/39381; ENST00000505263/Downstream/30002;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/38902, chr5-CpG: 78/Downstream/144682
Upstream sequence
tttatgtgggcagtgatgtgaacctgaacttcattagtgagagtagaaagaaccggaggaaattaagtataattcaaatggtagattcaaagtagttaac
Downstream sequence
tgcatctaagaaaagaaggcaataaattaaagataacaggataactcattaaattccagcttggtcacctgagtaaatgggaatgcgattcattgagcta
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate