Basic Information
VIS ID
TVIS44030682
Fusion event
HTLV-1-FGF10-AS1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr5
Cytoband
p12
Reference genome
NCBI36/hg18
Start
44444733/44408874 (Hg38)
End
44444733/44408874 (Hg38)
Orient
-
Location type
Intronic
Target gene
FGF10-AS1
Nearest miRNA
hsa-mir-10397/Upstream/5851313; hsa-mir-103a-1/Downstream/9542630;
Nearest TSS
ENST00000502646/Upstream/19168; ENST00000511712/Downstream/101366;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/805326, chr5-CpG: 69/Downstream/400071
Upstream sequence
TTAAACACTAATAAAAATGATTTACAATTATGAAATATCTAAACTGATCTAGAATGTGGaaattatacattttatttaagagcagtaagtgctgcatagc
Downstream sequence
aataacacagagaggactggatggattgggatatgggaggtgcctaaaattttaaatagggttgttacagtcttcactctgaaaattatgcccaagttca
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate