Basic Information
VIS ID
TVIS44030700
Fusion event
HTLV-1-LOC107986773 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr7
Cytoband
p21.1
Reference genome
NCBI36/hg18
Start
19334023/19327875 (Hg38)
End
19334023/19327875 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107986773
Nearest miRNA
hsa-mir-1302-6/Upstream/1200566; hsa-mir-10399/Downstream/377483;
Nearest TSS
ENST00000635602/Upstream/182454; ENST00000412563/Downstream/25659;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/182465, chr7-CpG: 44/Downstream/380899
Upstream sequence
AGAATGAGAGACTGGTGGCCATCAAAGCACTTACAGAAAATGCAGTGTGTTCTCAGAAAACAATTGTTCTTAAGTTAAACCCTTTTTACCTATGCAATGG
Downstream sequence
ATTATATTTTTAGTTCTTAAACTTATTTGTATAACAAGAAAACAACTACTCTTTCTACATGATTCTACAATAAATATTCCTTGGAGTTTGTAGAGAATAT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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