VISDB Viral Integration Site DataBase

VIS ID

TVIS44030702

Fusion event

HTLV-1-WASL integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr7

Cytoband

q31.32

Reference genome

Start

End

123142056/123714766 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-92a-3p ; hsa-mir-17-5p ; hsa-let-7b-5p ; hsa-mir-142-3p ; hsa-mir-1178-3p ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-877-5p ; hsa-mir-4451 ; hsa-mir-379-5p ; hsa-mir-3529-5p ; hsa-mir-4650-3p ; hsa-mir-1193 ; hsa-mir-4740-5p ; hsa-mir-4722-5p ; hsa-mir-1286 ; hsa-mir-873-5p ; hsa-mir-152-3p ; hsa-mir-148b-3p ; hsa-mir-148a-3p ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-2392 ; hsa-mir-3169 ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-6868-3p ; hsa-mir-4697-3p ; hsa-mir-1256 ; hsa-mir-5588-5p ; hsa-mir-4799-3p ; hsa-mir-4720-5p ; hsa-mir-6868-5p ; hsa-mir-3128 ; hsa-mir-1248 ; hsa-mir-1237-3p ; hsa-mir-4528 ; hsa-mir-622 ; hsa-mir-329-5p ; hsa-mir-323a-3p ; hsa-mir-223-3p ; hsa-mir-5096 ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-1277-5p ; hsa-mir-548c-3p ; hsa-mir-5681b ; hsa-mir-202-3p ; hsa-mir-4678 ; hsa-mir-548p ; hsa-mir-5683 ; hsa-mir-1252-3p ; hsa-mir-3646 ; hsa-mir-548e-5p ; hsa-let-7i-5p ; hsa-mir-98-5p ; hsa-mir-4500 ; hsa-mir-4458 ; hsa-let-7f-5p ; hsa-let-7g-5p ; hsa-let-7e-5p ; hsa-let-7c-5p ; hsa-let-7d-5p ; hsa-let-7a-5p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-92b-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-548aw ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-454-3p ; hsa-mir-3666 ; hsa-mir-4295 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-552-5p ; hsa-mir-302c-5p ; hsa-mir-4775 ; hsa-mir-143-5p ; hsa-mir-3944-5p ; hsa-mir-657 ; hsa-mir-3665 ; hsa-mir-4735-5p ; hsa-mir-586 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-590-3p ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-5688 ; hsa-mir-495-3p ; hsa-mir-561-3p ; hsa-mir-548at-5p

Nearest miRNA

hsa-mir-10525/Upstream/6694447; hsa-mir-10399/Downstream/3343322;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/156895, chr7-CpG: 132/Downstream/33579

Upstream sequence

gggtgaggacaagaatgaaaatgagggcaaatacaaaaatgaattagacaaggtcctcataaaacatctagttaataaaggggagattggcattaataac

Downstream sequence

tattaaaatgctactaggaaaaattagtatgcaagaaaaatgtaaaacctaactagtgtaggaaggcttccctgaggtgacatcttacctgaagaatgaa