Basic Information
VIS ID
TVIS44030773
Fusion event
HTLV-1-LINC01864 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr19
Cytoband
q13.43
Reference genome
NCBI36/hg18
Start
61278167/56074989 (Hg38)
End
61278167/56074989 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
LINC01864
Nearest miRNA
hsa-let-7e/Upstream/686747; hsa-mir-10394/Downstream/2259699;
Nearest TSS
ENST00000633603/Upstream/8305; ENST00000588203/Downstream/28495;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/216686, chr19-CpG: 178/Downstream/11683
Upstream sequence
ctcctgagtagctgggattacaggcacgtgccaccatgcccagctaatttttttatctttggtagagatggggtttcaccatgttggtcaggctggtctc
Downstream sequence
gaactcctgacctcaggtgatccgtctgcctcagcctcccaaagtgctgggattacaggtgtgagccaccatgcccagctaatttttttatttttagtag
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate