Basic Information
VIS ID
TVIS44030783
Fusion event
HTLV-1-LINC00624 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
q21.2
Reference genome
NCBI36/hg18
Start
145439722/147501287 (Hg38)
End
145439722/147501287 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1F
Target gene
LINC00624
Nearest miRNA
hsa-mir-101-1/Upstream/1650642; hsa-mir-1182/Downstream/833192;
Nearest TSS
ENST00000473358/Upstream/230292; ENST00000497938/Downstream/16588;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/257659, chr1-CpG: 81/Downstream/98169
Upstream sequence
GCACCAGTGGAGGCCGCAGGAGTAGAAACATGGAATGGCAGAGGCTGGAAATGCTGGTACAAGTTGTTGAACTGCATGGATCTAGAGCTTCTCTCAATGG
Downstream sequence
ATCTAGAACTTCATCGTCATCTGATCACCGAGACTACCTCTGAGGCTCACCTTGCTCATAACAAAAACTGTCCATGTTGGTCCTTTGCCCCAGACCTGTG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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