Basic Information
VIS ID
TVIS44030785
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p32.3
Reference genome
NCBI36/hg18
Start
50583184/50344925 (Hg38)
End
50583184/50344925 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-12136/Upstream/5799373; hsa-mir-101-1/Downstream/714912;
Nearest TSS
ENST00000473358/Upstream/23755; ENST00000424664/Downstream/76707;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/11061, chr1-CpG: 43/Downstream/70319
Upstream sequence
TCAGATCCCAGCCAGGCTCTGGCAGAAGCAAAGTTCTTAATTTTTGTGCCCATTTACTTATCAAACTAATGCAAGCTGAAAACACAATCTTTCCCAGTGC
Downstream sequence
AGTTTAAGTACAAATTACAAAAGTTTCCTTTGACAAGGAACAGACTCTATTCTGGCAAGCATACTCAAGGAGGAGGGACCTGGGGAGTAGGAGTTGTGCA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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