Basic Information
VIS ID
TVIS44030793
Fusion event
HTLV-1-LINC02742 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr11
Cytoband
p14.1
Reference genome
NCBI36/hg18
Start
28970324/28992201 (Hg38)
End
28970324/28992201 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC02742
Nearest miRNA
hsa-mir-210/Upstream/514653; hsa-let-7a-2/Downstream/5949636;
Nearest TSS
ENST00000527297/Upstream/89920; ENST00000530960/Downstream/167755;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/881527, chr11-CpG: 25/Downstream/1023924
Upstream sequence
ATGGTACATTTGAAAGTCTTTTTATTGTTTAAAAAGCCCATGTTCAAATAAAGCAAAAACAATTACTTATATACTTCTGGAATCTGTAAATAACCAAATG
Downstream sequence
AAGGCTATCTTATTGCTTTATATATGTATCCTGCTAATTTTGCAAGTATAATTGTACTGCACAACCTGTGTACTCAAATGACCAATCAGATTAAGTAAAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate