Basic Information
VIS ID
TVIS44030801
Fusion event
HTLV-1-KRT84 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr12
Cytoband
q13.13
Reference genome
NCBI36/hg18
Start
51059333/52379282 (Hg38)
End
51059333/52379282 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA12A
Target gene
KRT84
Nearest miRNA
hsa-mir-1244-3/Upstream/2145070; hsa-let-7i/Downstream/519607;
Nearest TSS
ENST00000382841/Upstream/11801; ENST00000547174/Downstream/1178;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/11967, chr12-CpG: 52/Downstream/221706
Upstream sequence
TGTTCATTTGTGTTtttggagtcagaaatctgggtttgaaatctggttcgctttgtaagttctggcaaatcatgtactttctctgagTGGGCAAAACAGG
Downstream sequence
GATGCCAGTATCCGCTTTTCTCCCCAGGGATCCTTCCAGTGTTAGGTTGATGGTGGCTAGGACTCATCTTCTCAAGAAGATTCTATTTCTAGAGAGCGTG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate