Basic Information
VIS ID
TVIS44030803
Fusion event
HTLV-1-MRPS31 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr13
Cytoband
q14.11
Reference genome
NCBI36/hg18
Start
40232223/40760087 (Hg38)
End
40232223/40760087 (Hg38)
Orient
+
Location type
Intronic
Target gene
MRPS31
miRNAs that regulate target gene
hsa-mir-16-5p
Nearest miRNA
hsa-mir-2276/Upstream/32200; hsa-mir-1267/Downstream/50679;
Nearest TSS
ENST00000623511/Upstream/7680; ENST00000417731/Downstream/10856;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/92474, chr13-CpG: 48/Downstream/10839
Upstream sequence
agccaggcatggcagcacatgcttgtaaaatcctagctactctggaggctgagacatgagaatcgtttgaacctgggaggtggaggttgcagtgagccag
Downstream sequence
gattgcgccactgcactccagcctgggtgtcagaactagactctgtcaaaaaaaaaaaaaaaaaaaaaactgtatgattccatttatatcaagttccaga
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate