Basic Information
VIS ID
TVIS44030813
Fusion event
HTLV-1-COL22A1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr8
Cytoband
q24.23
Reference genome
NCBI36/hg18
Start
139732114/138650689 (Hg38)
End
139732114/138650689 (Hg38)
Orient
-
Location type
Intronic
Target gene
COL22A1
miRNAs that regulate target gene
hsa-mir-5587-5p ; hsa-mir-432-3p ; hsa-mir-4436b-5p ; hsa-mir-197-3p ; hsa-mir-1193 ; hsa-mir-6500-3p
Nearest miRNA
hsa-mir-1204/Upstream/3845744; hsa-mir-10400/Downstream/2081875;
Nearest TSS
ENST00000518652/Upstream/30069; ENST00000518354/Downstream/71504;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/153158, chr8-CpG: 60/Downstream/226949
Upstream sequence
TCATCCACCCTGCCTCTCTCCTTGTGATCGGAGTTTAATGGATAACACAAGTAAAGCACTTAGAATACTCTCAAGAAAGATtagatagatagatagatag
Downstream sequence
atagatagatagatagatagatagatagacagatagacagatacacagatacatatagatagataATGCCCACACATTTAGCCATTATTGTTAGTTTATT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate