Basic Information
VIS ID
TVIS44030847
Fusion event
HTLV-1-C4orf51 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
q31.21
Reference genome
NCBI36/hg18
Start
146839404/145698802 (Hg38)
End
146839404/145698802 (Hg38)
Orient
-
Location type
Intronic
Target gene
C4orf51
Nearest miRNA
hsa-mir-12113/Upstream/2355267; hsa-mir-1305/Downstream/709781;
Nearest TSS
ENST00000502981/Upstream/18687; ENST00000508981/Downstream/33651;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/79298, chr4-CpG: 63/Downstream/34040
Upstream sequence
gtttttcaggataatttgaaaatgcccttggccaaggggaagctccaccagtcagttgggggagcttagaattttatttttggtttacaAGTTCATTATA
Downstream sequence
TATTTTGGATATTAACTCCTtgtcaggcctctgagcccaagccaagccatcgcatcccctgtgacttgcacatatacgcccagatggcctgaagtaactg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate