Basic Information
VIS ID
TVIS44030859
Fusion event
HTLV-1-HTR5A integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr7
Cytoband
q36.2
Reference genome
NCBI36/hg18
Start
154494601/155071958 (Hg38)
End
154494601/155071958 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA7I
Target gene
HTR5A
Nearest miRNA
hsa-mir-10399/Upstream/3638319; hsa-mir-153-2/Downstream/2502378;
Nearest TSS
ENST00000635602/Upstream/401; ENST00000486819/Downstream/5180;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/423, chr7-CpG: 178/Downstream/225037
Upstream sequence
GGTTGTTTGTTAAATATACAGAACACGAGGAGTTCAGACTGCGTCATTCTGCAGGGTCCCCTTTGGCCCCCAAATTCTATGGATCTATAACACCCTTTAG
Downstream sequence
AACATCTGAATAAGCTGGTATCTGGGGTACGCTGATTCAGTACACTGGAAAAAACTAGCAGCTTCCAGCACTTAGAATGGGGGTGTTCCAGGAGGAGGGG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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