Basic Information
VIS ID
TVIS44030868
Fusion event
HTLV-1-LOC105378797 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p31.1
Reference genome
NCBI36/hg18
Start
72606534/72368263 (Hg38)
End
72606534/72368263 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1L
Target gene
LOC105378797
Nearest miRNA
hsa-mir-101-1/Upstream/1300547; hsa-mir-11399/Downstream/4691880;
Nearest TSS
ENST00000473358/Upstream/85529; ENST00000418078/Downstream/396768;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/84210, chr1-CpG: 24/Downstream/1829879
Upstream sequence
tactacctttgaggttggtttgctgttgtttctctagttcccctgggtgtgatattagattgttaatttgcaatctttctaactttttgatgtaggtgtt
Downstream sequence
tagtgctgtaaactacccttttgacacagctgtagctgtgtcccacatattctggtaagttgtatatctttgttctcattagcttgaaagaatttcttga
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate