Basic Information
VIS ID
TVIS44030873
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p34.3
Reference genome
NCBI36/hg18
Start
36396471/36158283 (Hg38)
End
36396471/36158283 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-12136/Upstream/1488589; hsa-mir-101-1/Downstream/1003280;
Nearest TSS
ENST00000473358/Upstream/1068; ENST00000462118/Downstream/13685;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1574, chr1-CpG: 73/Downstream/17872
Nearby gene
TRAPPC3(-2230) ;
Upstream sequence
GGTGGGCAGACTGCATATAGGCTTCTTGCATTGAGAGGACTCTTCTATACACAGGGATCTAGATGGAGTCACATGAGAACCTGGATCAGGATGGTGGCAG
Downstream sequence
TTCCCCACACAGAATAGTCAAAGGTGACAGGAGTCCTCTGTGGGGCTTTCTGGGAGTAAATGTGCTCACAGCATGTGCCCTGTGATAGTCTGAGGCATGG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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