Basic Information
VIS ID
TVIS44030882
Fusion event
HTLV-1-TRMT61B integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr2
Cytoband
p23.2
Reference genome
NCBI36/hg18
Start
28939872/28863502 (Hg38)
End
28939872/28863502 (Hg38)
Orient
-
Location type
Intronic
Target gene
TRMT61B
miRNAs that regulate target gene
hsa-mir-331-3p
Nearest miRNA
hsa-mir-1301/Upstream/867053; hsa-mir-10b/Downstream/3668651;
Nearest TSS
ENST00000437798/Upstream/1553; ENST00000434238/Downstream/6793;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/52357, chr2-CpG: 65/Downstream/6360
Upstream sequence
actggggaacagagtgagaacccgcctcaaaaaaaaaaaaaaaGTAACATAAACAACTGGAAAAGAAAATATGGAGAAAAATATCCATCACATAGGTAAA
Downstream sequence
TAGCAATAAGTTCTTGCACATTTATAGTTTAGGATTATTCAAGCCATGACACTCTTCTGATACTATATATTTTAGAAATATAGGCACTTATCTGTTCTCA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate