Basic Information
VIS ID
TVIS44030896
Fusion event
HTLV-1-CFAP100 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr3
Cytoband
q21.3
Reference genome
NCBI36/hg18
Start
127621638/126420105 (Hg38)
End
127621638/126420105 (Hg38)
Orient
+
Location type
Intronic
Target gene
CFAP100
Nearest miRNA
hsa-let-7g/Upstream/629553; hsa-mir-12124/Downstream/1155161;
Nearest TSS
ENST00000440867/Upstream/339; ENST00000506204/Downstream/13275;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/3517, chr3-CpG: 220/Downstream/54735
Upstream sequence
TCCATGTGGGCCAAAGGTGAGCTGCCGCCCCCAGCCTGAGGAGGAGCCTGGCTCTGCCCTGCACAGGGCTCGGAAACTATTCCTCTGCTTTCTCCAGAGG
Downstream sequence
GTCAGGGTACAAAGAAGCCCTGGAGGTTTCTGCAGACGATGCGGCTGGGGCGGAGCCCGTCTTACCTGAGCAGCCCCCAGCAAGGCAGCCAGCCCAGCGA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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