Basic Information
VIS ID
TVIS44030912
Fusion event
HTLV-1-AGBL4 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p33
Reference genome
NCBI36/hg18
Start
49916298/49678039 (Hg38)
End
49916298/49678039 (Hg38)
Orient
-
Location type
Intronic
Target gene
AGBL4
Nearest miRNA
hsa-mir-12136/Upstream/5132487; hsa-mir-101-1/Downstream/1381798;
Nearest TSS
ENST00000473358/Upstream/420628; ENST00000494555/Downstream/173479;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/778798, chr1-CpG: 34/Downstream/345706
Upstream sequence
aacaaatttctgctgcttaagcaacccagtctatgatattttgttacggcacctaaagctgactTGGATAAACAgtgcagagctggtgctaattcttctt
Downstream sequence
tatatatttggtagaatcctctagtgaaacaattaaggcttggacacatcctttttgaaaacgtttttatttttctaaactacaaattcaatgtccttaa
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate