Basic Information
VIS ID
TVIS44030920
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
q23.2
Reference genome
NCBI36/hg18
Start
157834355/159597941 (Hg38)
End
157834355/159597941 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-101-1/Upstream/2661697; hsa-mir-1182/Downstream/302038;
Nearest TSS
ENST00000473358/Upstream/10116; ENST00000368109/Downstream/115826;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/409233, chr1-CpG: 87/Downstream/182685
Nearby gene
APCS(-9070) ; OR10J6P(+358) ;
Upstream sequence
CACCTATGGTTCTAATTCAGTAAGTCCAACTCTCTCACCCCCTTTTTTTGTCTCAGCTGTGTGGGCTTTCCCAGGATGGCATGCAATGGGACCCCTGTGC
Downstream sequence
CATGCATATTGTAAAGGAAAATGCCTCCCTCCATGCGCTACAAAACAGCACATTTATGATGGCACTTTGAAAAGATATGGGTTGTGGTGTCACATATTGA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate