Basic Information
VIS ID
TVIS44030926
Fusion event
HTLV-1-GNAT2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p13.3
Reference genome
NCBI36/hg18
Start
109959474/109615329 (Hg38)
End
109959474/109615329 (Hg38)
Orient
-
Location type
Intronic
Target gene
GNAT2
miRNAs that regulate target gene
hsa-mir-9-5p ; hsa-mir-1-3p
Nearest miRNA
hsa-mir-101-1/Upstream/16362; hsa-mir-11399/Downstream/2846441;
Nearest TSS
ENST00000473358/Upstream/2272; ENST00000469039/Downstream/775;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/66361, chr1-CpG: 23/Downstream/4513
Upstream sequence
catagtggcgcatgcctgtaatcccagcactttgggaggctgaggtgggtggatgacctgaggtcaggagttcctggccaacatggtgaaatcccgtatc
Downstream sequence
cactaaaaatacaaaaattaggccgggcatggtggctcacgcctgtaattccaacactttgggaggccaaaatgggcagatcatctgaggtcaggagttc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate